Scaffold Ga0075118_10132023

Overview

Basic Information

• Taxon OID: 3300005933
• Scaffold ID: Ga0075118_10132023
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 851
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042573	Metagenome	158	Y
F077795	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075118_101320232	F077795	AGG	METINIEDQCLLYFFYNKIEKVYIGETSKGYGRFYQHKDKKFDKHNVKYISGKKLNFLNNEYFRKYYELRLINRFKPKYNKEKTTAPTLNDFICKMFLWYENPNPTFINPLTAYNQIKYNKYFEYRTKQRRIKKVLNQYTNVWKNLDMNKKLYIDGQNAFNFLINETMKPTNNYSIKFTPRKERLHN*
Ga0075118_101320233	F042573	N/A	FDEHDDSIELKKLKKENNQLKKTIDIIQTDNDIKDYEIRILKERLKEKK*