NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075118_10067801

Scaffold Ga0075118_10067801


Overview

Basic Information
Taxon OID3300005933 Open in IMG/M
Scaffold IDGa0075118_10067801 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1292
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026152Metagenome199Y
F042572Metagenome / Metatranscriptome158Y
F076505Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0075118_100678011F076505N/AAILSSFVLSFLGVILMMHLDFWTGVLLTITGMVCLLRALPRIQEDI*
Ga0075118_100678015F042572AGGAGGMSRRLIVYKVQYRLNSDPWNRDKFIKTKRIIMTPDEVNQTDGYWRNHSRVSKKFFDQMETHESNEQGRYSIWSIKKA*
Ga0075118_100678016F026152AGGMEYKKSMKKTKLGTPKFWTAKAWADHLLWISGFTSNKEVNNVQSNNRRKVPRKSNKSKQSSQATV*

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