Scaffold Ga0075118_10067801

Overview

Basic Information

• Taxon OID: 3300005933
• Scaffold ID: Ga0075118_10067801
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1292
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026152	Metagenome	199	Y
F042572	Metagenome / Metatranscriptome	158	Y
F076505	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075118_100678011	F076505	N/A	AILSSFVLSFLGVILMMHLDFWTGVLLTITGMVCLLRALPRIQEDI*
Ga0075118_100678015	F042572	AGGAGG	MSRRLIVYKVQYRLNSDPWNRDKFIKTKRIIMTPDEVNQTDGYWRNHSRVSKKFFDQMETHESNEQGRYSIWSIKKA*
Ga0075118_100678016	F026152	AGG	MEYKKSMKKTKLGTPKFWTAKAWADHLLWISGFTSNKEVNNVQSNNRRKVPRKSNKSKQSSQATV*