Scaffold Ga0075118_10008335

Overview

Basic Information

• Taxon OID: 3300005933
• Scaffold ID: Ga0075118_10008335
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4862
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010625	Metagenome / Metatranscriptome	301	Y
F019396	Metagenome	230	Y
F070579	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075118_100083351	F019396	N/A	TNGLPCMAQQTYEPLVSSDGKTFCKNYSFPNEYQYMNSADRPLYTTEVVNWFWSNELMWIEHFKDKPYAPEILDIDLINKRIYIKWYTESCNQIIYSGKDWPQQHWRKQIRDIIVDQYNEGVYKLTMYPHCHYISDDGNMRAIDWYGCVPVNDPYIEEKYMQGIIHETAQFRLDETGKPLDGKLNLEMMFERSLSTHVMWGNHNMNYIYDEIFTRVTNA*
Ga0075118_100083355	F070579	N/A	VKFYITGSTRGLGKYLAEHFNCECLDRPIDLNMDINSVADSIEEGSTVILNAHASQLEYVHKLKDKCKLVICGSVAAVNADPTMTEYSEQKYNLEKTVTKLALESKYPILYLRLTSSSYRNEHLIAKSIQFWIDTPDVTFIGYNINE*
Ga0075118_100083358	F010625	N/A	RNKFPDMIPNITQIDMYSKKLYMEVQGVDFWQQTLDNNCTYDNILPNWREQMLDIFRAHKSLGIYKYSLHPSSYFVVDGKLKSINYFFCYRDIDPMISLRSVMSHISEDRQADLFPKMSAMGLDVDMPTPHKQIQMLAFESFKTNFPDDVMEEAKAIYA*