Scaffold Ga0075118_10000580

Overview

Basic Information

• Taxon OID: 3300005933
• Scaffold ID: Ga0075118_10000580
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31900
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054685	Metagenome / Metatranscriptome	139	Y
F087884	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075118_100005801	F087884	GGA	MLYKLTVGQYQLLNEIDEDLSMIEQNIYAVSAIKGITYEEASRIKMVDFSKLVEGLSDFNVRLLEKVRINNSITLGGVKYHIEHKPDKLSSGQLLDVLNIRSKNQGKAVEVMDLLLAAMCKPKGKHYGDDGIGLNERAALIRDAKLSEVWNVFVFFWNLWNNYLDNTEDSLTKWMEETPKKVQEILDNDG
Ga0075118_1000058063	F054685	N/A	FFLESLEQLLRQYRGLFNKVDGGDTEEGAGDFGQRWALFSVMAEMAALHNISINDTTKMGAIEFLNWWAYMTEKTDYEKTAK*