NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075105_1010799

Scaffold Ga0075105_1010799


Overview

Basic Information
Taxon OID3300005928 Open in IMG/M
Scaffold IDGa0075105_1010799 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1273
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameDeep Lake, Antarctica
CoordinatesLat. (o)-68.5627Long. (o)78.1882Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051583Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0075105_10107991F051583GGCGGMTSHVPLTVGRSAPEGTQTNMDYTNPEDVANIDEPTRQQEIGLLSGLVDGTFVCVNYRGFLVNRTENGSIELSRDGEVLGGQYYVTENNFADLIEWLNAKAALYGETA*

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