Scaffold Ga0070766_10022218

Overview

Basic Information

• Taxon OID: 3300005921
• Scaffold ID: Ga0070766_10022218
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3381
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012806	Metagenome / Metatranscriptome	277	Y
F032790	Metagenome / Metatranscriptome	179	N
F068093	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070766_100222184	F068093	GAGG	MIYELDKRQLLRLWSALSSFGEIRETKDPIIQSEILRRVQLVLTDFVFGLKRVPEDQTSTTPLEGGRSQTVTFDA*
Ga0070766_100222185	F012806	AGGGGG	VTDAPPIIIDEDAAIDSAFFNSHAGRSCYARAHRSGWVLVVRQVVAQREPPVMLQVWGRVERVPDDDASCLALWERCAYPR*
Ga0070766_100222188	F032790	GGA	MSVDRETQMTITRREILHRVPQRLKLTEQQSWQDIAQSKGMTYLQRLPEAIPEGQFLVHNSVRPTHPLGSHGFRAWLQAQDERLEPCDCGWTPELGTHYRVKLKIPVRDRAARSTDFA*