NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075116_10028695

Scaffold Ga0075116_10028695


Overview

Basic Information
Taxon OID3300005918 Open in IMG/M
Scaffold IDGa0075116_10028695 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2360
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039448Metagenome / Metatranscriptome163Y
F078142Metagenome / Metatranscriptome116Y
F098516Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0075116_100286951F098516AGGAGMAIDEASSFGALTDHFAILETVHDEGTLADIMVLVASSKSRRAQNRADAHDANEDLAASAYSGNSAEEITEVSCTYALKSGSLDLSDLVIGELAVQIMAESLEVTTSNGGWPQITVTGYLGLETITAPSSYTNQFTLPAITVTGIKQAQVLGFTVTTGRLTGSKISFNCSMAEQLDGVGEPAAHGVSGGTGEVTAEFVRVDSAPAWELAAVLADSGVGAVFMAEVTADPQADEGQAAW
Ga0075116_100286952F039448N/AMNMSKAIELAMAETIRKYAQMGEAVTIRAWRSLEADGSWKENPDRKFPMIDVRCSTPKTDDNESTRQVECAILMGTNADDDKSHAFISDMENAVQGVCDTIFSQFRSGGFTGEEIAYFLARVVAETSTDLFQFGGLTFGDGLAPADDGGINMIGITMIVHYGRSDF*
Ga0075116_100286954F078142GGAMSFETDAFDGIYASITIARCQIRIGRTVITKAMCAGIGVLRENTDEGQFGGIESNARLLTTDEVEAVDPDKEIKNGKVIEILPNGKTEWVKARVGGRFTVGGLTRLILEAVNE*

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