Scaffold Ga0075116_10028695

Overview

Basic Information

• Taxon OID: 3300005918
• Scaffold ID: Ga0075116_10028695
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2360
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039448	Metagenome / Metatranscriptome	163	Y
F078142	Metagenome / Metatranscriptome	116	Y
F098516	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075116_100286951	F098516	AGGAG	MAIDEASSFGALTDHFAILETVHDEGTLADIMVLVASSKSRRAQNRADAHDANEDLAASAYSGNSAEEITEVSCTYALKSGSLDLSDLVIGELAVQIMAESLEVTTSNGGWPQITVTGYLGLETITAPSSYTNQFTLPAITVTGIKQAQVLGFTVTTGRLTGSKISFNCSMAEQLDGVGEPAAHGVSGGTGEVTAEFVRVDSAPAWELAAVLADSGVGAVFMAEVTADPQADEGQAAW
Ga0075116_100286952	F039448	N/A	MNMSKAIELAMAETIRKYAQMGEAVTIRAWRSLEADGSWKENPDRKFPMIDVRCSTPKTDDNESTRQVECAILMGTNADDDKSHAFISDMENAVQGVCDTIFSQFRSGGFTGEEIAYFLARVVAETSTDLFQFGGLTFGDGLAPADDGGINMIGITMIVHYGRSDF*
Ga0075116_100286954	F078142	GGA	MSFETDAFDGIYASITIARCQIRIGRTVITKAMCAGIGVLRENTDEGQFGGIESNARLLTTDEVEAVDPDKEIKNGKVIEILPNGKTEWVKARVGGRFTVGGLTRLILEAVNE*