NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075116_10028441

Scaffold Ga0075116_10028441


Overview

Basic Information
Taxon OID3300005918 Open in IMG/M
Scaffold IDGa0075116_10028441 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2373
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039448Metagenome / Metatranscriptome163Y
F078142Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0075116_100284413F078142GGAMSFETEAFNSIYASITIAQCQIRIGRTVIAKALCAGIGTLRENTDEGQLGSIDANVRLLAADEPDGEIKTGTVIEILQNGQDEKTGWVKARVGGRFPVGGLTRLALEAVNE*
Ga0075116_100284415F039448AGGMNTTKAIELAMAETLRKYAQMGEDVTIRAWQSLPADGSWKEHPDRKFPMIDVRCSAPGHDDNESTLQVQCAILMGTNTDDDKSHAFISGMYEAVQDVCDTLFAQYRTGVFTGTELAYFLARVVAETSTDLFQFGGLTFGDGLAPADDGGINMI

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