Scaffold Ga0075116_10010787

Overview

Basic Information

• Taxon OID: 3300005918
• Scaffold ID: Ga0075116_10010787
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4032
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Staskawiczbacteria → Candidatus Staskawiczbacteria bacterium RIFCSPLOWO2_01_FULL_38_12b (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053745	Metagenome	140	Y
F064378	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075116_100107872	F064378	AGGA	MAITATNINVKGATVRVGGTVITDPSSADWYDVSPAGTDVGCTTGGVTVTYSLDTSDIFCDQSTPPVDVAITGETATVEFSMLESTAENLKLVLADFASSEDESGVAYWLGVGGINTISYTVLELEISDNDTGYLNTWTFFRCVSGGFEANFERENPTAFGVTFTAYADTDHSSGKQLFQIRQNKV*
Ga0075116_100107874	F053745	AGGAGG	MTTKVEVKHSPGGQLIKKPSYLLELEAKWKRWTKIEDPEAFEALKDLSGDLWGELRKLEAQLCKEIENRELPDDFKEFAKAKIRDTWRDIIGHQKIGLDKLCIVIRQHLKEEK*