NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075116_10010787

Scaffold Ga0075116_10010787


Overview

Basic Information
Taxon OID3300005918 Open in IMG/M
Scaffold IDGa0075116_10010787 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4032
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Staskawiczbacteria → Candidatus Staskawiczbacteria bacterium RIFCSPLOWO2_01_FULL_38_12b(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053745Metagenome140Y
F064378Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0075116_100107872F064378AGGAMAITATNINVKGATVRVGGTVITDPSSADWYDVSPAGTDVGCTTGGVTVTYSLDTSDIFCDQSTPPVDVAITGETATVEFSMLESTAENLKLVLADFASSEDESGVAYWLGVGGINTISYTVLELEISDNDTGYLNTWTFFRCVSGGFEANFERENPTAFGVTFTAYADTDHSSGKQLFQIRQNKV*
Ga0075116_100107874F053745AGGAGGMTTKVEVKHSPGGQLIKKPSYLLELEAKWKRWTKIEDPEAFEALKDLSGDLWGELRKLEAQLCKEIENRELPDDFKEFAKAKIRDTWRDIIGHQKIGLDKLCIVIRQHLKEEK*

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