NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075116_10000998

Scaffold Ga0075116_10000998


Overview

Basic Information
Taxon OID3300005918 Open in IMG/M
Scaffold IDGa0075116_10000998 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13039
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091386Metagenome107Y
F100335Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0075116_1000099812F100335GAGGMSQLLDELRKLIEDEASEDYSDAQLKVYLNKYRNTLDDYLLEAETDDYLVWISEFKYLSDVILDSATDTPVTDDYESDDINGIFTFIIAQSAVYIKAQYYDLFLTASDIWLVRAARCSFSGEVKLGDETIPQDKLNREYCISKYWMLRQSDSNEMVRE*
Ga0075116_1000099818F091386GGAGLEVITSTRNRQATIIAQNPSAIIITRITKESDGAGGWTTAPSTLDSQDIRIYSKRTRTLVIDEGGYHTVRVTKGVAKYDANVLKYGSNNEDKFTFMGKTYRIFDVIDQRVKGEIVFRELQLEDIT*

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