Basic Information | |
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Taxon OID | 3300005915 Open in IMG/M |
Scaffold ID | Ga0075122_10025245 Open in IMG/M |
Source Dataset Name | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2759 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031354 | Metagenome / Metatranscriptome | 182 | Y |
F059653 | Metagenome / Metatranscriptome | 133 | Y |
F091296 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075122_100252452 | F031354 | AGGA | MKTTFDINDILYPIINVAAVKATIDGGVYRNKKPLNSELRDIVIIPLSNYSGDEIINEATFMVNCYCKNFTNGTQDITKLRATANSVIAVIEAYNNTKNYDVFNITNQILLQDVDQMSMSYTNLRVECFIEK* |
Ga0075122_100252454 | F091296 | GGAG | MVIKRYPHTATISYYGAGTTNSLGIYTEGTLVTVGIVCNIQPNTTRYIIGESGDMIGYNWDIMSPLFTGAGSVPDDATINFHDKDHVIKLLYPYQKHVEVKC* |
Ga0075122_100252455 | F059653 | AGGAG | MTNLEALQSQTEYSNDNLLEKILLDKGITSGDTYTAANEKNIDLAAASLYFTLAAHPEFRDGKTSIKYNPVQLIAMARAIERKYGVNVATVDGAAIW* |
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