Scaffold Ga0075122_10001585

Overview

Basic Information

• Taxon OID: 3300005915
• Scaffold ID: Ga0075122_10001585
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15988
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (48.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F046685	Metagenome	151	Y
F064414	Metagenome	128	Y
F075727	Metagenome	118	Y
F077915	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075122_100015851	F007072	GGAGG	MELSKLGKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTADSVAYNVTGDLQTEIGNNTSIAGIILTISLVGIVLTILIGVFVGVRSGARRV*
Ga0075122_1000158512	F046685	N/A	MQEQMNPQEAYQSIPVSPDELYANAIQEDKIKNIISQLDPENQLKEIEMRIRGYKKNVFTHDWEKIDPDSPEPPKLLISRFISYLSSIMNQNTTQGNLSDRQINALMAQAINYIADELDGNSAIYNLDGNYTERTRIGHIMLNSMFFTLNRSLNGQEAKRMWKAMSLQDNLTNDDKGKFSEALKFWK*
Ga0075122_100015853	F077915	GGAGG	MAVTDYYVAPTGNETSGLFELSKYVGISATAGLFWPIMLLVIWIVSFLGFKQYSTSRAWTFASFFCSMLGMFLAVLNLMAPRWMYLSIILFLIGLVWLKLEGANG*
Ga0075122_100015854	F075727	N/A	MEKMNKKGWVARDFIIAMLLFSGALAILVLMIGSLANDYGNTEVINPEFSEKFDKFSDDTDRAGEMWESATSEGGLSLVGTADLLFFSTFRVISLVFTSVVAAGEQMAGFGEFFGIPSEISSIFMVLIFTILTVSIVFIIISSIRSGREL*
Ga0075122_100015859	F064414	GAGG	MGIGDITSKMPGMGPGGMSNIVYIIIGFAVLLLCAFGLWWFLKKRKTWNIKVEFKIPRNIKKVRTKEGTIKIIGTLNKEWGKGFYDAKKGSVFVKRKGKKPVAMKPFDIKQYLSTGNILTVVQTGIEDYRPIRDESYIELKDVQGNDGALVQAVIDTSESKSWKNTFERESKMTYSIKNWIAEHGALVAMGLVLLMNLIGFSIVIARMPK*