NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075122_10000893

Scaffold Ga0075122_10000893


Overview

Basic Information
Taxon OID3300005915 Open in IMG/M
Scaffold IDGa0075122_10000893 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22330
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (95.35%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019930Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0075122_100008932F019930AGGAGMRKLNLKDYTVIVRTPDQMKLGKFIDAEFPYPVKDSILNLLFVPALQLNGAELVKQNVLAMKLEQCKEDNILLEDEEYNRIKKAIDTFKGFGKNDVELVERINEAEKVEVEQK*

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