Scaffold Ga0075117_1024386

Overview

Basic Information

• Taxon OID: 3300005914
• Scaffold ID: Ga0075117_1024386
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2206
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006056	Metagenome	382	N
F009733	Metagenome	313	N
F010818	Metagenome / Metatranscriptome	298	Y
F061563	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075117_10243861	F006056	N/A	GVDRFTGAISDLNVSFISTGTPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVTDILDATGLDYLNAGDPAITLYAILEADAQPSTALDALARIAQGTGATYYDDPTGRIIFEDYGNRGSTTFPGIWANQTGTWAEAEGTWADAPLFPTSFNLEAPGVIFSPTWAKTLTPLINDVTVTYGPDESVTQTDSSSITQYGRREYRLDTDIKTIDDATTRAAGIMTAQANGLWNLGQISVLVDQLDAEDTTALLELVSGDLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWGEVGAGAQWFEIVTNSDLVRL*
Ga0075117_10243863	F061563	GGAGG	MINTAQAVTSLRPNIEWTMTGNEVAGITWHTPDVEPLTEAEVTKEMKRLEDLALTTEDNRLADIQAARAFALSLGFTPAMLGVMYPQLKGA*
Ga0075117_10243864	F009733	AGG	MSEIDQELHVDTPPEPVEPKKKPTSSKHPKVATETERARAIVRAKLKR*
Ga0075117_10243865	F010818	AGG	VDFTDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATLTIQPGFRNGGESLADVAAKVDRISEKLGL*