Scaffold Ga0075108_10005166

Overview

Basic Information

• Taxon OID: 3300005913
• Scaffold ID: Ga0075108_10005166
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5343
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012719	Metagenome / Metatranscriptome	278	Y
F025717	Metagenome	200	N
F031527	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075108_1000516610	F012719	AGGA	MIGCAANSVGIYPLGPITTLIGGFCWLAVAIMWKEAALITTNLVLSTITIVGLVYTYIH*
Ga0075108_1000516614	F025717	GAG	MLKQQLEKLDFYKGVKFEVKGKQLFARSKDRTSLQEQTEKYFKRNRILFNPRKKITELDVTGASQVLVFKPMAAKGAGGLKFEDQIVADLNNWLKGADYDELKHPDTIQQLVKTIRLKQDSSYYVKGVGSENTRRPPTFTKTKATVTNNVKGKVSDVNIYNKSNRVLHHLSLKFSNSFYIYNATVINYFRSPTASVRTMINEFFGFDGVKMGKAFGKEYAAKTPKNYNYSSILTRFRDLLIQCLGPDIVLVLKVGPGNNHIDNIKGFGHKISLSGLTKDSYGYAETGVRKYNFIRFRAVVNGHNYEIDFQFRGTTSTDTGPRYLRILFKAK*
Ga0075108_100051665	F031527	N/A	MKTQKNKMKKVYEYMTVFFAVLGTLAMVSATGAVETDQWLLGAAAVSTGIASFIISLFSQQLYSEAK*