Scaffold Ga0075109_1017754

Overview

Basic Information

• Taxon OID: 3300005912
• Scaffold ID: Ga0075109_1017754
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2982
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013138	Metagenome / Metatranscriptome	274	N
F015799	Metagenome / Metatranscriptome	252	Y
F087777	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075109_10177543	F013138	GGAGG	MSNPFTRQAISNHNTKNYSVEDVKKSNARFYEKNPGAIEPAAMIKKAMQNPNDEVVLEQTRKENEMENFIGKLNITGSIY*
Ga0075109_10177544	F015799	GGAG	MTKTQMTTRTPVKYNSSGAAAGFGPEPHPPHQDPSAANTIQDKTKGNSSFHADNAAFIKKIKRG*
Ga0075109_10177548	F087777	N/A	MSRNNDFVATKAEKTFDDDGNIKVAEVVSPNKTKLNVIRQIGNKAGSKNFPTAKELLDSKQKPAEVIELKPKDK*