Scaffold Ga0075109

Basic Information
Taxon OID	3300005912 Open in IMG/M
Scaffold ID	Ga0075109_1010916 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005912 Open in IMG/M

Scaffold ID

Ga0075109_1010916 Open in IMG/M

Source Dataset Name

Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4038
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4038

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured marine virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Ace Lake, Antarctica
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Ace Lake, Antarctica

Coordinates

Lat. (^o)

-68.4725

Long. (^o)

78.188

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F026152	Metagenome	199	Y
F026154	Metagenome / Metatranscriptome	199	Y
F033221	Metagenome / Metatranscriptome	178	Y
F050676	Metagenome / Metatranscriptome	145	N
F076505	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075109_101091611	F026152	AGCAG	MEDKQSMTKTKLGTPKFWTAKQWADHLLWVSGFTNNGEVNNVQSNNRGKVPRKSNKFKQSSKATV*
Ga0075109_101091614	F033221	GAG	MITYDILQVIEGDTDKHSNYQLNQYEFPFPENSVLIERDKEAKRIQRSFVTSIKQSLLNNNN*
Ga0075109_101091615	F076505	N/A	MGLLAILSSFVLSFLGVILMIHLDVWTGLLLIITGMVCLLRALPRIREDI*
Ga0075109_10109165	F003677	AGG	MVDEALCLFHSDVDKEIYEVENEITYVTKWQVIAKNRDEAFDIWLENHKLNMSTEDSKNTVCSYAKDYSQMGAIKKIAKIKYNEESDEVYADES*
Ga0075109_10109166	F003834	AGGA	MSSTRTPIRQSEMDYLDHFMETKYDERKNILKTEMQDTIDSESELNFDAFKEKLKLTKLHEDVRNNYNDREKFANEMDSTLLEKTSKLDNSINDLEGKLENWKKVRKWDTEIERSLIKHPDELDRLLKKICHEETSRDFYSGPRGKALQMLDLSKEYCKNLLNAGQSLATVWGVVGQEMAKEKINTSTVPKPEFLAITK*
Ga0075109_10109167	F050676	AGGAGG	MQTKLPVKSRVADKYKPMLTWYAELIGLCHETVAETESLQMLDSMGKKTTATSLFIRVCQRMDKSIDAKEVAEKLETISQSTNERKTA*
Ga0075109_10109169	F026154	AGGAG	MNGIFNVLRFVTYTVGGLAIRKGWNWLIEDVDPIPGSKEFEDEYIKTTMKYHRLTKKKEEYETYRKNR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075109_1010916

Overview

Ecosystem & Geography

Associated Families

Sequences