Scaffold Ga0075109_1006782

Overview

Basic Information

• Taxon OID: 3300005912
• Scaffold ID: Ga0075109_1006782
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5431
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014448	Metagenome	263	Y
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F067117	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075109_100678214	F067117	N/A	MNTKVIKEKMKMLQIPVTEKQFESLKEKANKEKRSLPNSILLILEPHMKVK*
Ga0075109_100678218	F014448	N/A	MKLKNLNIYKLFSKTYKDRKMFDFMDFGEISLLPKGKTVRQTTSKILMGSHVDKFIKERQLTLVVNNAN*
Ga0075109_10067828	F028622	N/A	MKDKQQYRTHKEHGEDISHENERKHTNEFINDDRGSLDLTFQIDMLNKKIKNLDGLEKIHRQTNGDLRVHIVKLDREIHQLKKDIFIQNENNQINIIEKDNEIGRLIKKITEK*
Ga0075109_10067829	F020603	GGAGG	MRLLLLLTLGILLTNCSSYKPLINPETSKDKHNGNVIAGNYWKDLQVCHYIFKENTGKFAILTDKKGFITKCMNDYGYSILR*