Scaffold Ga0075109_1002214

Overview

Basic Information

• Taxon OID: 3300005912
• Scaffold ID: Ga0075109_1002214
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11003
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013421	Metagenome	271	N
F018943	Metagenome / Metatranscriptome	232	Y
F074760	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075109_100221414	F013421	AGG	MNNFKYYYNNVPGKGLCRNNLIYTSLINEDATEFCMWFHNDSEYHKGHNEVVDPVLMESKYYREKDFLLTLDVDHKNLIPKLTKIHTDEQKIYFEIQGVDFWEQSHGKTYEDVLPNWQDQMLYIMETHKKLGIYKYSLHPSSYFIIDGELRTINYFFAYRNNEPAITVQEHMSHISKERQQQLMPQMKKLGIEENKTYPFDKLQVLCLESFRNVYPDSFINKAISIYK*
Ga0075109_10022144	F074760	N/A	MMLQKLETKTDSKILFDLVKHLPEGKSVLNKPTGNFFYDPWELLPEYKDTAIEDLLKQLPDHGEARVIVLKPGESYSAHADIDDRYHLTLDAEQSFLHDIGDEMMYATKPDNTVYLMNAGVLHSASNYGYKNRYQLVIRKRLQSNHMMKDPRQVVMTSKDPVYNLRYLFDSSFSILLNRLAKEQSIDSFARINEHTIKFLCDGSKINELLKMQQICGFKIDIVYA*
Ga0075109_10022149	F018943	GAGG	MRIAITGHTSPMGKDVYEHYSKTHQCLGISRTTGYDFTNTDSLNNTVSEVLARDVFLNIAHVGASQSSLLLKLQDRWTHDAPLRKVITIGSLATKVPKKLLDQVGIDKQYLKDKHHIDAVHNALANQTPFGPQLKFSLVRVLNYGEKTGDRSGEPTCTAQDITRTIDYVIDESMYISTLDVRRS*