Scaffold Ga0075109_1000406

Overview

Basic Information

• Taxon OID: 3300005912
• Scaffold ID: Ga0075109_1000406
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30167
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (85.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y
F084734	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075109_100040633	F005796	AGGAG	MLEYSVFVFCLIGCGLTCHALGKQEGIECTIEHLVDNGMIELDEE*
Ga0075109_100040634	F084734	N/A	MKKYKKKPWTDVERKTLAAHYFSQDIEDMMGMLPERTEQAIRNQVAYLRKRGIRFKQ*
Ga0075109_100040636	F025150	GGAG	MINVYTEGNCLKDYTTFIDECIMALFPEDAKYDIYIEVEKFVDEDGSHAGFCLGDSKDCVISLATHWVYEDGEEIAYEPHELASNIAHELVHAKQFCKNQINMIDNVWKHNNVVLNCDEIEYEELPWEVEAYTYEVFLTDILWENV*
Ga0075109_100040638	F047922	GAGG	MILPVLEMNPQEIVLHKAQWMMANYYESHTHTDLRKDALEWCKAHCFQWRFDFKRFTDVYADTVRFELEEDFTAFNEWYRGRWDV*