NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0075109_1000181

Scaffold Ga0075109_1000181


Overview

Basic Information
Taxon OID3300005912 Open in IMG/M
Scaffold IDGa0075109_1000181 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44324
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (59.02%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048152Metagenome / Metatranscriptome148N
F098266Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0075109_100018113F098266AGGAGMTDNAFELMVEQDVDTVLDTVVKDEFYWRNWYNGTMFINGMTMDAMKSVLIQLRAVYGNVEMNRCGDTDEYAFDFCE*
Ga0075109_100018119F048152GGAGMAIRKKLMITGCSFSAPSTDPALLGTSWGEKLAAKLDWDLVHLARQGMSNGGIRVMVDEILRQKPDFAIVAPTFADRMEIPGGAAPYVAPKNENKGWNSDLQQHLQTDHGTGYDPAAGVNNINWGNNNYRMISETIFSLAENYDHHYRSQQLDKNTNQAVRQYINFMYDSNWKLQQDRWIIRDGIMQLHYYKIPFLLVACNIWTSDMVRDHFPTSIPDQHFTLKFEDTPAYATNEYPFSGEDPGYHGAEQSQEYLADRYADIIRNRFTIND*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.