Scaffold Ga0075109_1000178

Overview

Basic Information

• Taxon OID: 3300005912
• Scaffold ID: Ga0075109_1000178
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44768
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (48.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057761	Metagenome / Metatranscriptome	136	Y
F065682	Metagenome / Metatranscriptome	127	N
F100962	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075109_100017815	F065682	N/A	MTVKIQKNKIVINDFQHYWQSATEHGHEFTFAYDKEFKNSKKFTIEVKHSDKLRSKDGRWSPIKIKS*
Ga0075109_100017849	F057761	N/A	MIAVGYEHIKLDSWTGPPYSYSVKVNGKLKQMSGFDEEHIKNQLYPNTATMIRKIKDV*
Ga0075109_100017854	F100962	AGGAGG	MNKTKKVSSKKKKALVKAIKNPIRYFKLDLARYGGEVCMGTITSAQFEYWYNNDKFEQYMVDIDFDAKEANKDVPKDAQFDRPFHEQDDICHISGPELADGQTMTITEMDKDGDTLMAEDGGFPEDQKIDFADFKKLGVKIKCVAKHNSGSKSCKDKHYMFGQYFNKGGWYTEDLIKTGPDGINFKKMNIDYEDADGFKVFSQVTIDGVDYYLQEDSSGKGSSFYVMEGDDV*