Scaffold Ga0075270_1011104

Overview

Basic Information

• Taxon OID: 3300005894
• Scaffold ID: Ga0075270_1011104
• Source Dataset Name: Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_203
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1075
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Twitchell Island, California
• Coordinates
  • Lat. (^o): 38.1087
  • Long. (^o): -121.653
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042361	Metagenome	158	Y
F043311	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075270_10111041	F043311	N/A	LDRCAREACDALLRLRSEAPPGQFEGAVCAPPVEGAPQQQEVELDRPEVPATVTLSSCEAHAGVRLTLRAGPLAGTLVSIASPHPFRYGSENVARQGRHPQLGRIFERVADLTDPGDVSRRSDGAVEVALTPTVANQVFWFFTLRRRDY*
Ga0075270_10111042	F042361	GGA	MRALFAVLLSLAGVATSGAAYVRSNGPVRPASPWSLAERLGALRIDRALPRAVRKQATFSLRGEHAVLKVREASGPVLLRCNRLGVDLSDAFQSYAASGAPPGCETQAVDEVGDLLVYEVGGRVAPLCPGQYATLTEQQLHDALFLPALQLGPEPSPAALEPGRLESCGPGEANCALSKSAGALIYCGEVRTCAQGACLQGGKDVDPD