Scaffold Ga0080455_1122971

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0080455_1122971

Scaffold Ga0080455_1122971

Overview

Basic Information
Taxon OID	3300005882 Open in IMG/M
Scaffold ID	Ga0080455_1122971 Open in IMG/M
Source Dataset Name	Hydrocarbon microbial community from Halfdan Field MHF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	623
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	Halfdan Field, North Sea, Denmark
Coordinates	Lat. (^o)	55.49	Long. (^o)	7.42	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025408	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080455_11229712	F025408	AGGAGG	MEVDGDVQELLVESLNDWLDNLYDIMKRHIIKMGKAKSVEDIMRYKKEMLVDYMDSMPMGPDQCYFCLLHRGDSCEACEYSMVHGCCSDDEGSDYGKINSLRDKLRQVLEERYYRGESYSDTH*

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