Scaffold Ga0080455_1095002

Overview

Basic Information

• Taxon OID: 3300005882
• Scaffold ID: Ga0080455_1095002
• Source Dataset Name: Hydrocarbon microbial community from Halfdan Field MHF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 796
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Halfdan Field, North Sea, Denmark
• Coordinates
  • Lat. (^o): 55.49
  • Long. (^o): 7.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024691	Metagenome	204	Y
F041530	Metagenome	159	N
F047350	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080455_10950021	F047350	N/A	VAIVLFSAIMVRLENLNRRISRLEGKMVILCDTMRAFKEIRGK*
Ga0080455_10950022	F024691	GGA	MRYHAGFQRDKRKIKTNLPLVEIKASKRKSTLHDRVLVILSTLIRNFSERVNVDHVKPPIALDKSLKLTDERGKKYDIAFIYEGELFLIEVKRCRRWQ*
Ga0080455_10950023	F041530	AGG	MAIERMERKQKGVITQLSGKLKNVEFRTRRDGRIELGARRIPKQPGTPAQQRVRKAYGKIYQKWTKLSEEEKAYWNNLGKPEKLSGWNVFLRENMKAQTFKVVLDCSGMSTTYENYTLIMFLADFPDLYNALNDDLTNI