Scaffold Ga0080455_1072347

Overview

Basic Information

• Taxon OID: 3300005882
• Scaffold ID: Ga0080455_1072347
• Source Dataset Name: Hydrocarbon microbial community from Halfdan Field MHF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1036
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Halfdan Field, North Sea, Denmark
• Coordinates
  • Lat. (^o): 55.49
  • Long. (^o): 7.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019652	Metagenome / Metatranscriptome	228	N
F084260	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080455_10723471	F019652	N/A	DLIKDMAKKEKALIEFQQKKHSVENDLRNKAQVIADQISEIFNNTIKRNKWDMNRINIDIHDDKDAVDYITKKIKKACYEEAEVQARAKHQLYHALENKKKKCLNILYTGSHIQPTLVELQKEMATANIQLDLPNSLLALPSK*
Ga0080455_10723472	F084260	N/A	MEILFALGLFVIIGVGLWLMRETDKFVDEHNRQIRLQRACDQVDKIVKQKQMEFKFDK*