Scaffold Ga0080455_1043837

Overview

Basic Information

• Taxon OID: 3300005882
• Scaffold ID: Ga0080455_1043837
• Source Dataset Name: Hydrocarbon microbial community from Halfdan Field MHF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1670
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Halfdan Field, North Sea, Denmark
• Coordinates
  • Lat. (^o): 55.49
  • Long. (^o): 7.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002282	Metagenome	575	Y
F008817	Metagenome / Metatranscriptome	327	Y
F097240	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080455_10438371	F008817	N/A	HFSHANDYVTVIKEAETFEDAMKFKVAAEMLEAKDSGNTIQILINTDDAFNFTRKPLLLTDEVKQAS*
Ga0080455_10438373	F002282	N/A	MMSEADIIEYNKLTEKLELLKKQGTPVDDRGPNDLTKQIEVLKFRNEKLHNYNQKLIEEVRSLRSKLYIKEN*
Ga0080455_10438376	F097240	AGG	MPYRDPNDPRITGLKRLKKDFEYRNSERGFVTCCIGRRFKPSAKKYGGHLAADHMDKKEFWRLYMNHIIIMK