Scaffold Ga0075287_1001231

Overview

Basic Information

• Taxon OID: 3300005873
• Scaffold ID: Ga0075287_1001231
• Source Dataset Name: Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3202
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Twitchell Island, California
• Coordinates
  • Lat. (^o): 38.1087
  • Long. (^o): -121.653
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F002569	Metagenome / Metatranscriptome	547	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075287_10012312	F002569	AGG	MKVLAQANSIFSLRFPLAQRRTPKYSLVRPRTSVPSTLEFMRVNNATVREGRTHRVWPPEVLRAFQTAEIITELQTTHYVLRDSSITRLSSHG*
Ga0075287_10012314	F000265	GGAG	MPETRGIQATDEVKSEWSLAYKYYLRAPGDRFDKKKDRTQRIDYVAQEMKLTRKQAKRRIRNYEAWQRNIKKGIVRP*