Scaffold Ga0080006_1258013

Overview

Basic Information

• Taxon OID: 3300005861
• Scaffold ID: Ga0080006_1258013
• Source Dataset Name: Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10281
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F065947	Metagenome	127	Y
F072527	Metagenome / Metatranscriptome	121	N
F084462	Metagenome	112	N
F099550	Metagenome / Metatranscriptome	103	Y
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_125801310	F072527	GGGGG	MCVKNSRSMSQQTNRLAELLQQAVLAFGADRVQVLQKIRQYIAQTDCTVLNVQLQQVTNINMLRMLQAAGVPQCIQATFYLQINKALRGVTP*
Ga0080006_125801312	F101506	AGG	MNEDAVARTRISAIEQRIQSVEEQISDIRATQLRQLERQNYVLMLLAISLVTTTVNLIVLLVK*
Ga0080006_125801316	F099550	GGGGG	MYRLTDEIKKLLASKRKNMQIVWVPLPILDEIAQIAEKLHLALNQTIIVLTIYALREPQPQPADGAEHFLCPICLNTFNDPHVFLTHLTGDEDVEVKPHI*
Ga0080006_125801317	F065947	N/A	MKMLKSNHTFSLAKIRSALKRNKRIELPCVAYGTGNLSRKIGRGYFFYDFDTQSEEEVQRFAKRVQYTFYVAYVLFRTKHGVMVMSTLTFSFEQLRKYYDQFQREFPSDYLWDIPLFLRLSEKWDWQTGQVVSAMPAIIANPKNIDIYKLIREDMYPKKWYRTRD*
Ga0080006_12580134	F084462	GAGG	MISVPKEKKTVEVLGVAEVPAIEPQRLGQFDTQITYRVDPLHVFTFRVPQTNMNAQQITDAVKKDYAKRKGIVGMQVEV*
Ga0080006_12580137	F047176	GAGG	VSAMATRIFRFYISLTASQANNGASGNPSPFTVTAPSGINRRIVEIRPWGTQAFEFQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGSATGTFGVDVVVEESALATGGAAAPTAG*
Ga0080006_12580138	F033508	AGGTGG	LAAEAAPAPFVSSTTLRRVTGSSTTQLTIPARVGHRHVLYDLFVTGAPAYGYADVAVGTRIFIRLPFQAGNCTTLSTPGQKIQGKGFLWWFSDLFGAEHLPNAAEDEDINITLNAAALRVDAYYAEIKPQDVSSHSVTGGSDAKVKPFIEVLDTLVATTGNGINVLNENMPTGLGLLDNNGRVKATTQFTLLTAFADYTSGGTNFTEYSRLHIYDEDEELYTPLNHEGLFIDYTVAQGDLFMDFPNQRYFKPDTPYVFKPNHQVSLKADVPAVTGTGSTLRVALIGTRERIG*