Scaffold Ga0080006_1204811

Overview

Basic Information

• Taxon OID: 3300005861
• Scaffold ID: Ga0080006_1204811
• Source Dataset Name: Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3613
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F021133	Metagenome / Metatranscriptome	220	N
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_12048113	F008949	GGTGG	MSSQTVTLGTQTITPRVEDMGNSYYIEFQVTITKYLNNPVNQTIDVKFVCNKYKQVPSNPLSPPTTVQKTIQECVDEWYNQHKSVYEVA*
Ga0080006_12048114	F076262	AGGTGG	MSFNPVIKGSYTLAAPQSVSVAASSSSSVSISFTPLGAGELYVYITLPSGVSATVSIGGQSVSLANGGNQFLIPANTTIGNITINNSNTAAVSVIVWALFIEVA*
Ga0080006_12048115	F021133	GGTGG	MGRRDELIRQIYENGNYAIKKICEMGSDDNMANFSATDCIIGTTNTHLALKIAKEKGYPQDVIEYLENQSKQEQWHCQLHIGKPPKPYDFMVAQKHREILLKYSIYVWMGVMPLLGEKTALAKAICWRREDDPHFVNKFATVDEYYHTTYPLLLLYKYASEEELE