Scaffold Ga0080006_1188986

Overview

Basic Information

• Taxon OID: 3300005861
• Scaffold ID: Ga0080006_1188986
• Source Dataset Name: Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8336
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F065947	Metagenome	127	Y
F072527	Metagenome / Metatranscriptome	121	N
F084462	Metagenome	112	N
F099550	Metagenome / Metatranscriptome	103	Y
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_118898610	F072527	N/A	MIWVVPPQGSTTAYRRRGYVYKQEKNSTSMSQQTNRLAELLQQAVLAFGADRVQVLQKIRQYIAQTDCTVLNVQLQQITNINMLRMLQAAGVPQCMQTTFYLQINKALRGVTP*
Ga0080006_118898612	F033508	N/A	MRRVTGSSTTQLTIPARVGYRHVLYDLFVTGPTVYAYADVSVGTRVFLRIPFQAANCVTVQHPGAKVNGKGFLWGLSDLFGAEHLPNAAEDEDINITLSAAVARIDAYYAEIKPQDVSSHSVTGGSDAKVKPFIEVLDTLVATTGNGINVLNENMPTGLGLLDLNGRVKATTQFTLLTMFADFVSSGTNFTEYSRLHIYDEDEELYTPLNHEGLFIDYTVAPGDLFMDWPGGKYFKPDQPYVFKPNHQVSLKADVPAVTGTGSTLRVALMGIRERIG*
Ga0080006_118898613	F047176	GAGG	VSAMATRIFRFYISLSAGQANNGASGNPSPFTITAPSNINRRIVEIRPWGTQPFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHEYSVVMTNNGTATGTFGVNIVVEESALATGGAAAPAAG*
Ga0080006_118898616	F084462	GAGG	MSKPNEKKTVEVLGVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPATNLTAQQIADYVKKDYAKRKGIVGMQVEV*
Ga0080006_11889862	F065947	N/A	MKMLKSNHTFSLAKIRGALKRNKRIELPCVAYGTGNLSRKIGRGYFFYDFDTQSEEEVQRFAKRVQYTFYVAYVLFRTKHGVMVVSTLTFSFEQLRKYYDQFQAEFPSDYMWEIPLFLRLSEKWDWQTGAVVSAMPQIIANPKNTDIYKLIREDMYPKKWYRTRD*
Ga0080006_11889863	F099550	GAGG	MFRLTEEIKKLLASKRKNMQIVWVPLPILDEIAQVAEKLHLALNQTIIVLTIYALREPQPQPADGAEHFLCPICLNTFNDPHVFLTHLTGDEDVEVKPHI*
Ga0080006_11889868	F101506	AGG	MNEDAVARTRISAIEQRIQTVEEQINDIRTTQLRQLERQNYVLMLLAISLVTTTVNLIVLLVK*