Scaffold Ga0080006_1147614

Overview

Basic Information

• Taxon OID: 3300005861
• Scaffold ID: Ga0080006_1147614
• Source Dataset Name: Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3085
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F045200	Metagenome / Metatranscriptome	153	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_11476142	F076262	AGGTGG	MSLNPVIKGSYTLAAPQSVSVAASSSSSVSISFTPLGAGELYVYITLPSGVTATISIGGQSVSLANGGNQFLIPANTTIGNITINNSNTAAASVIVWALFIEVA*
Ga0080006_11476143	F008949	AGGAGG	MSSQTVALGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNQTIDVKFVCNKYKQVVVPSNPLSPPTVQTVQKTIQECVDEWFDQHKSVYEVA*
Ga0080006_11476144	F011097	GGAGG	MIRDVPLYTSGGTDPFTGLSVGGSPITGNSSNGQLLRSHPNYARLHIYITGLSGTSPSIQFTVGTFYGSNNYTLPPITSPQYVYIIGNENKTIITYLNTSGQVLQQVELPYNIFLNGVQVSWSVAGTSPSISAYIHFEFEDEEEDEE*
Ga0080006_11476145	F045200	N/A	LLTPSAPEDRTYLVWFGSPAGTTNEKPQFSIFYAKVHPDQYKPGAPASTWLDPPVLLLSYDQISRDVVNWADNVFTAAGYSPSSPGVINVPNNVYVTNYGSVNFAGAPSTITLNFTGTPELKQLHMIYDMLDDTVLMYFSIMVPNWNDATKVQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDSTIEQTIVKALGTNWSNTLQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPLYMNPYNYPHGDSLMAIAFADIHKNPAQPQIYYQPIITTYGYGFLGFNQLPENLESCPSSYGSNSYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGTYIIPITSPPRPDWGGISSMRMKVLYIAPIFHQFQAYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKATMGGYHADNYIDGIAIYIDKSVISPKGKTLVTVPPLIFGQTSAGGSYYVIAGYNGINLIYHGVVAYTFGKKYARVYLSVNANNPAFITIYTRYRARSAPDLQQMYGNSPNPNNTAVYFPSLERNFGTLVYASDYSYNMPYGIEYPRTSKFRVDGQVLWVITNASVGPVWVELEGN*