Scaffold Ga0080006_1134530

Overview

Basic Information

• Taxon OID: 3300005861
• Scaffold ID: Ga0080006_1134530
• Source Dataset Name: Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5526
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065947	Metagenome	127	Y
F099550	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_11345303	F065947	N/A	MKMLKLNRTFNPFRVFGVLHHRNNTNNLPCVAYGTGNLSRRIGRGYFFYDYDTSDEKEVQRFRKYVQHNFYVAYVLFRTKHGVMVMSTLTFNFEQLRKYYDQFQAEFPSDYLWDIPLFLRLSEKWNWQTGQVVSAMPAIIDNPKQVDIYKLIREDMYPKKWYRTSD*
Ga0080006_11345304	F099550	AGGA	MYQLTDEIKKLLASKHKSMQIVWVPLGILDEIAQVAEKLHLALNQTIIVLAIHALREAQPQQNNGSAHFLCPICLQLFSNPSDFLTHLSGDENVEIKPHI*