Scaffold Ga0080006_1134036

Overview

Basic Information

• Taxon OID: 3300005861
• Scaffold ID: Ga0080006_1134036
• Source Dataset Name: Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5419
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F072527	Metagenome / Metatranscriptome	121	N
F084462	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_11340362	F084462	AGAAG	MSVPKEKKTVEVLGVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPATNLTAQQIADAVKKDYAKRKGIVGMQVEV*
Ga0080006_11340366	F033508	AGG	LAAEAAATPFVSSTTLRRVTGSSSTQLTIPARIGYRHVLYDLFVTNPPSYGYADIAVGTRVFIRIPFGAQFCDTVDRPGFKANGKGFLWGLSNLFGPEHLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVNGGSDAKVKPFIEVLDALVNSAGTGINVLNENMPTGLGLLDISGRVKATTQFTLLTMFADYVTGGTNFTEYARLHIYDEDEELFTPLNHEGLFIDYTVAQGDLHMYWPQQLYFKPDTPYVFKPNHQISVKADVPAVTGTGSTLRVAMIGVRERIG*
Ga0080006_11340368	F072527	N/A	MSQQTNRLAELLQQAVLAFGAERVQVLQRIRQYIAATDCTVLNVQLQQITNINMLRMLQAAGVPQCMQTTFYLQINKALKGVTP*