Scaffold Ga0080006_1095823

Overview

Basic Information

• Taxon OID: 3300005861
• Scaffold ID: Ga0080006_1095823
• Source Dataset Name: Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6500
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F008949	Metagenome / Metatranscriptome	325	Y
F011233	Metagenome / Metatranscriptome	293	N
F021133	Metagenome / Metatranscriptome	220	N
F023140	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080006_109582310	F021133	AGGTGG	MTRRDELIRQIYENGNYVIKRICEMEPKDEMANFSATDCIIGSANTHLALEIAREKGYPQDVVEYLESQSKQELWHCQLHIGKSSKPYDFKVAQKHRETLLKYGIYVWMGVMPLLGEKIALAKAICWRRSDDPHFANKFATVDEYYHTTYPLLLLYKYATEEELEKIVELQKEYIERIFNLS*
Ga0080006_10958233	F011233	N/A	MTVPWFLPFVKGWRYHVPKLQRELLSGLSVPFTSEYTILDGQFPGYFVSAAIGTTDPNFITRVSADGLIIIEVTAGDLRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESTKEFFESITPSVVVPPAVPSQPRFVAEEVVSAKLPVKVT*
Ga0080006_10958234	F006070	AGG	MTLYPYLVVDLPITDTNTHTYRTDPFNPFALTQPGISLIRLGESVPPVRAFNIYVYNYANADLSVQVIANENAKNYQYGYLLDGLDYQSESGYPDFNVGSPVTAASGSLQQPGVQTVQADFYSTSAERYISLALTYSTAPTTGFVRAHIDLFYGGV*
Ga0080006_10958237	F008949	GGTGG	MSSQTVQLGTQTITPKVEDLGDSYYIEFQVKVSKYLNNPVNQTIDVKFMCSKYKQVVTLQSPLTPNMQTVQKAIRECVEEWYNQHKSVYEVA*
Ga0080006_10958239	F023140	N/A	MFIGLVTVPVYIVLKPLPFFAVFGVGVLTTLTVLMLFFYFLGAKFVGIWAVLQKFSVTLPTSFVLTRLVEDVPRNPYLDYVVLFSVGYTVSTPLIFLTYHITRWFYDKKR*