Scaffold Ga0080004_1212897

Overview

Basic Information

• Taxon OID: 3300005860
• Scaffold ID: Ga0080004_1212897
• Source Dataset Name: Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34084
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (72.34%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Washburn Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F008219	Metagenome	337	Y
F069685	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080004_121289724	F069685	N/A	MSEEKPTEDVEVLKARIAELEAENEKLKTTMAEATKTLTAYVEREREAAIKSILEKTTLSKDELEKLNLSQLRLVQKGIDSVKGTVKNVRSAGATTSEDENRLTVGCLYHKEK*
Ga0080004_121289738	F006925	GGTGG	MAVEVSVLENFGREAELRKKWLQMWERLGVRILKLPKWMQEIVLEDVNTAIKNRLAIMEMIQNAKRSH*
Ga0080004_121289745	F008219	GAG	MPRYLVEIILVVDAKDFEEARKIADHIIDVPIPDSTAENAIESLRVEEIVQIKNQKSG*