Scaffold Ga0080004_1144126

Overview

Basic Information

• Taxon OID: 3300005860
• Scaffold ID: Ga0080004_1144126
• Source Dataset Name: Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25037
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (92.31%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Washburn Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080004_114412625	F092976	GGAGG	MMQEILHWKQELRRVRQEFLQVWQQCPRCGAKWADIAWDAEGDHEFLLVECRNRHLFRVDEEFWLFDCDDHSDAGVYAPSEELK*
Ga0080004_114412627	F088087	GAGG	MKKVSDGSVWTPVTVSSAPCEICGRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEKFINGGDE*
Ga0080004_11441263	F084856	N/A	MMERGDAMSDLSNLMIVTHLYTKEHAEALLQTLPAWRKLAPSSQIIVGYYQSRLQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGANGSLFKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLSRNCNPVRYVKSEAQADRKSNKPFGRR*
Ga0080004_114412630	F100012	AGGAGG	MDREKVLQALREAQAEYNIENLDEFTKQAWEEGNILDAEIVAELTERAVEILFDQHFLWVHIIESEDCEEWIPDGWYSFVAVHPKTHQCLTVLEDPVYSWESRASFSARIRSAEDAIDAVTRLAELIEQNLKGRAVE*
Ga0080004_114412631	F069506	GGAGG	MQLEQLPYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWDDPDFPNDIPEIIMRAVEEIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFIHVAGTVVDYEGIVRLVTKLLNQIQSALADA*
Ga0080004_114412632	F086364	GGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPWTVEEAVEALTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILEIEDAVQAVEYFLRLVQQA*
Ga0080004_114412637	F104114	AGGAGG	MERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWSLSCSVEDIAPGTLAEIVIRTVEALLGLQWRLEWDYDADADDMVLSSGAATYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFGDAAQAVVDLADIIAEKLLVVRSQVLSLKEVQ*