Scaffold Ga0080004_1135652

Overview

Basic Information

• Taxon OID: 3300005860
• Scaffold ID: Ga0080004_1135652
• Source Dataset Name: Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2622
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Washburn Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080004_11356522	F077502	GAG	MTDVAHIIIWIDKNLPQEGKLSEIIDNLFSLIQEIILNNLSQGKQPISFTSVREIADTFKEIIYRSIEQTIGTLTEDVKEQVDAYFFKKLNDIYDKYYS*
Ga0080004_11356524	F077499	AGG	MADLFVFPNESLKQVGYPNITNAEIVFVLTITTPIKDHPNTDAPMDEKMKFLSTYMPLEFQKMYYMKAIDRALDILKYSLYTREENVLFEIASKINDMYDVKELSNKVKDVECTKDLKQINITLTEAKRYIYPDISLSKYASQQAKQLGIRKYEYYARIFQCYIDRDKDLDMLTLFRVSNVVYNYIRLNNLSGIIKKMQFKNDKIAELMEKIKQRTKITLEAMMDRKPIEPNDSILNSITIRIKEIDLE*
Ga0080004_11356525	F056742	GGAG	VKLADCRYKCKQMYFRRSLFVRMFITEVERVYNVEVKSCEDFCKFYILFLSVAGMLYGKHYNYAIFKAIMRGRPNLYMCMKCNSVLTAEESITHTLQHMKQLGYNPLAYKENI*