Scaffold Ga0080003

Basic Information
Taxon OID	3300005859 Open in IMG/M
Scaffold ID	Ga0080003_1007178 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005859 Open in IMG/M

Scaffold ID

Ga0080003_1007178 Open in IMG/M

Source Dataset Name

Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3218
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3218

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Washington, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Joseph's Coat, Yellowstone National Park, Washington, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_10071781	F080245	N/A	MIFVWSAKVVIPGFRDEIFVSPALINKYVELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDEELLKKLEETSIEDLNYPLNTI
Ga0080003_10071782	F087442	GAGG	MMREGLVKVGNLVVDCKPCYVAGTGFNKDDVYVVSEGTVVFKWYDKIAVITVGEEGTKVNLFDIIDVRFLVERNENCMATRL*
Ga0080003_10071783	F081547	GAG	MPYLRGVFVNIGEETYYLSCGIVKGGNLDVETYTINNPEMMMVRMGRDIYVVTSELKLIIPVEPIRVLLSSETSKVYNEALSQGNEVRPA*
Ga0080003_10071784	F076263	GGAG	MLSAEDLSAILDDLEDLCARLPEGVTFHPTLEIRRRYANEEATYIKFDCRNHKYILTIVRMGIAKTTRVSTREDLYRRIFPEYAPGYNGSYTEEYWGEE*
Ga0080003_10071785	F080247	N/A	MIVWGKTIECIIDTDVNYLNGDIFNNPLWIKGKFLVFGNLYTTEKTTPGGETVQLCVPIDATFMAYYQGMVAVMSFYFRDKVQYANISLTDPDTIREFLIMSTYYRKYGVSIPNVLDKIMYRRVPT*
Ga0080003_10071786	F061983	AGGAGG	LKKYTFKVKVVPVKIFDEEGVLSEQEFEEVKRTHIYKGMKVLEVKDLGYDDFWKTIHYNELIVVSEGGGLFDCYYGDIIVVEKLKDVGAIVVKEKDTEPMRTMKTLVARWHNKKLVEEEKAYDVCNKFVM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080003_1007178

Overview

Ecosystem & Geography

Associated Families

Sequences