Scaffold Ga0080003_1004047

Overview

Basic Information

• Taxon OID: 3300005859
• Scaffold ID: Ga0080003_1004047
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5475
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042426	Metagenome / Metatranscriptome	158	N
F048414	Metagenome / Metatranscriptome	148	Y
F063847	Metagenome / Metatranscriptome	129	Y
F077501	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_100404710	F077501	AGGAGG	MDKRFLSLIILFSLLIPLTVNASVFSITFIPENMNQSYTVNIHNQNNTFNSTYQFYGIAEINLTQGVYYIKIISENYNPIIFELNLTENTTLQLYFNSNIIGYGIQNYDYIIFTIMMIMAIFGVLIVMVYYMKGVKVK*
Ga0080003_10040473	F042426	GAGG	MENNVKRLMDLPLKSIYTVGQGETKSGFEVYYLFEYKSGNFSDKADNVYMVYATTILGEWITENFDKLKKTVFELEVEFRDSQYGKKIAVPIRVKKIMDKPKISFNVEESGF*
Ga0080003_10040475	F063847	AGGGGG	MSKFKKYIFCYDQYSYLQDKVITHRVSIYAKDLKEAKDKLNKLGYKDIYVKKRKKVRVE*
Ga0080003_10040478	F048414	AGGAGG	MFSGKLKENASTSLFYSFLLFVFSFVLVIAGLNYIWGRPALIWLPLNIWNLLINLGIFLAVIIIFIIVVRRFI*