Scaffold Ga0080003

Basic Information
Taxon OID	3300005859 Open in IMG/M
Scaffold ID	Ga0080003_1002712 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005859 Open in IMG/M

Scaffold ID

Ga0080003_1002712 Open in IMG/M

Source Dataset Name

Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7806
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7806

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Washington, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Joseph's Coat, Yellowstone National Park, Washington, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F021133	Metagenome / Metatranscriptome	220	N
F023140	Metagenome / Metatranscriptome	211	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_10027125	F021133	N/A	MAKRDDLIHQIYENGNYAIKKICEMGFNDNMANFSATDCIIGTTNTHLALKIAKEKGYPPDVIEYLENQSKQEQWHCKLHVGKPPKPYDFIVAQKHREILLKHGIYVWMGVMQLLGEKVALAKAICWRREDDPHFVNKFATIDEYYHTTYPLLLLYKYASEEELEKIVELQKEYIAEIFKLK*
Ga0080003_10027126	F023140	AGGA	VNYLTLTDKFSGVEKMNLHERILISNIFIGLATVPIYILLKSFPFFIVFGAGILTTLTVLILFFYFLGAKFVGTWAILQKVAVTLPTSFVLSYLVKLLSTNPILDYIILFVVGYVISTPLIFLTYYITMFLYGKKG*
Ga0080003_10027127	F076262	AGGTGG	MSFNPVIKGSYTLVSPQSVSVAASSSSPVSISFTPLGAGELYVYITLPSGVTASISIGGQSVSLSNGGNQFIIPANTPIDNITINNSNLSAVSVVVWALFIEVA*
Ga0080003_10027128	F008949	AGGAGG	MSNQSVKLGTQTITPKVQDMGNSYYIELQVKITRYSGDSVNHTIDVKFTCIKYKQVVVPSTNPLSPPTVKTVEKTIQECVDEWYDTHKSVYEVA*
Ga0080003_10027129	F011097	GGAGG	MIRDVPLYISGGTDPFTGLTVGGSPITGNGVNYQLLRFHPNYARLQIYITGLSGTSPSIQFTVGAYYGSNFYTLSPITSPQYVYIIGNENKTIITYLNTNAQVLQQVELPYNIFLNGVSVSWSVSGTSPSITAYIHFEFEDEEEDE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080003_1002712

Overview

Ecosystem & Geography

Associated Families

Sequences