Scaffold Ga0080003_1001809

Overview

Basic Information

• Taxon OID: 3300005859
• Scaffold ID: Ga0080003_1001809
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10744
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024140	Metagenome / Metatranscriptome	207	Y
F049100	Metagenome / Metatranscriptome	147	Y
F067920	Metagenome / Metatranscriptome	125	N
F084461	Metagenome / Metatranscriptome	112	N
F101504	Metagenome / Metatranscriptome	102	N
F102725	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_100180914	F067920	N/A	MPADLVFGISDQGLFGAISSVAEYILSFIKVLVEQASIYAVDFLKQMWSNPTQTITFLTLLGVVLI*
Ga0080003_100180915	F084461	GGGGG	MSLNLGDLLKSNKAILQSENGKIVLRITFDDLVQAIINGLPEQSKKVVSITHDDKQLVISFDASILSGTIGGIAR*
Ga0080003_100180918	F024140	N/A	MNWKPTSLSHIVSLITLMISLLGINAITFYYMQHPNTTQLLFISLVNITGLIGMSYYMVSFSANEKGVTIQSKPETTT*
Ga0080003_10018092	F049100	GAG	MEFRKLTQKEIEEIKNSVNHGGRKSLYDEYLKDMQIGDMVEVQNVNRGVISRAGQRLGYKFSVHFVNGKYYIERTA*
Ga0080003_10018096	F102725	GGA	VYEKKPEPEQNKEYRIINVEQQKGQFGEYIRVTLEDSEKKQYSSALWVKDTVSSTSKAGAFALALGTNPETWINKYIKVISWTPKNRVIIEIPKGIDTKTETKKVK*
Ga0080003_10018098	F101504	AGGA	MLNYLTTNFDKVLTINTVSQASLKQIGNELNNFDGILYIDDIGSINTEYMRITTMTTLTYLAYQHYLRRLDSTTNLEIKNFNGSLIINIQPAIFNEIANNTSFEANIMDKSYRIYNMRIPSNKPFQHPKIKELQHIKDKFDKMKVDIDKHKVEALADNFMTFNSPVRRYKIVYNFVKLTAILNEHKTAISSDYNFVSKMLLNNIIESELLQRKGITNTFKFNVFLFNTMLLAKEYGNVFHYDKLKKYLNVGTKTIYNYAKMNNIKIDNGYIIYDDERIIRVLKNVIH*