Scaffold Ga0080003_1001777

Overview

Basic Information

• Taxon OID: 3300005859
• Scaffold ID: Ga0080003_1001777
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10845
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F070317	Metagenome / Metatranscriptome	123	Y
F076264	Metagenome / Metatranscriptome	118	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_100177716	F076264	AGGTGG	MSAISGAIQNMVTGLQNLFIAMIDLFSNAVNAIGNTLSSLAQPIGYLIGVLAVFGSLLAIIYGVFRGRNGVGGLIGGLKGFFSSFI*
Ga0080003_10017773	F056742	AGG	MKLADCRYKCKQAYFRRSLFVRMFITEVERVYNVKVNSCEDFCKFYVLFLSVAEMLYGKHYNHAIFKAITRGRPNLYKCLKCDNVLTAEESITHGLQHMKQLGYKPLTYEENL*
Ga0080003_10017774	F077499	AGG	MTDLFVFPHESLKPVSYPNITNAEIVFILTITVPIGEHPNADSPMDEKMRFLSTYMPLEFQKMQYMKAIDRALDILKYSLYSREENVLFEIANKINSMYDIKQLTNKVKDVECTKDLKQINVILTEAKRYIYPDISLSKHASAQAKQLGIKKYEYYSRIFQCYIEQDRDLDMLTLFRVSNIVYNYIRLNNLSNIMKKMKFKNDKIVQLTEKIQQRVKITLDAMADRRPIEPDESILNSITIKIKEIDLG*
Ga0080003_10017776	F077502	N/A	MTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFTSVREIADTFRELIYRSIEQSVGTLTEKVKEQVDTYFFKKLNDIYDKYYS*
Ga0080003_10017777	F070317	GGTGG	MQTTVNNMSTMEELKELNLERIVKDAQEGEVCVVNKILKGKLTDLMPLIRDPANLSQKAMEFIQSRGDDVFYLFQCTIRQGRNVKLLVRQSFDPRSTFYSLMKKYKTIKVGDEVNVFYNPEKRRYDFLL*