Scaffold Ga0080003

Basic Information
Taxon OID	3300005859 Open in IMG/M
Scaffold ID	Ga0080003_1000965 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005859 Open in IMG/M

Scaffold ID

Ga0080003_1000965 Open in IMG/M

Source Dataset Name

Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16792
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (19.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16792

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (19.23%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Washington, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Joseph's Coat, Yellowstone National Park, Washington, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062912	Metagenome / Metatranscriptome	130	Y
F087443	Metagenome / Metatranscriptome	110	Y
F090626	Metagenome / Metatranscriptome	108	Y
F097670	Metagenome / Metatranscriptome	104	Y
F099549	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_100096515	F099549	N/A	MDENFQYTYQIPDLKTRFQIGFGNIIEQIVNLLTYSEMYGDTETFDNEELKYKLRAAIAYALALLGSTWGYAMSVQVQADVETAKESLKALFSRIIKDSELSYLDLLDIYYQLIQKVSIILNYGTPIPRPRTGNYEIT*
Ga0080003_100096519	F097670	N/A	MMNYKVFDKEMFFETDHIISIDQKTGEIKHDEKYYYDDGKGLKEIKDLQEYSLRLYEITQKVQEEFTKFSTKYAKPPIGYIPISNVIFEYMLNRNKVVLISYANMLKTKSEVSKEITNDTIKILLKSKTIFNKEWNFESIQNLSDDIKDNITKIIEKALKSAMTILKKNT*
Ga0080003_100096525	F090626	AGG	MPRIFRFENIYFGKNSLVKLFANKTQIENHVDYDSTVLAYLLDVSDFTNTNALLSHFAIINDKEIKPILVEWNLRTIHGRLMILLNQLPGPHDTKMLLKKYEQIIEDNGRPEVVKYTAGQFAKALSDTKGLQQVYNFLVQRIYTLKSIGIKRSEEEVKRLAAVYR*
Ga0080003_10009657	F062912	N/A	MEPSEVLTKVYNLFLVSDIIENGSDIDKEIEQLLVDRDYENMAKTILYSLIYTVNNHLIYENVRQAYINNTIDLLYIIDRMGFNNERIIKKFVKLIYQFYSYSLQNRINFIADKEKRELVKAKLNELIDTIQWER*
Ga0080003_10009658	F087443	N/A	MGEKKNYWMVFEEGDDVNYIEKEIAKASIELNKDILEMRAWIFKTFAYDPEVKAKIIEYIKKNGSGKN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080003_1000965

Overview

Ecosystem & Geography

Associated Families

Sequences