Scaffold Ga0080003_1000886

Overview

Basic Information

• Taxon OID: 3300005859
• Scaffold ID: Ga0080003_1000886
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17693
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_100088616	F075084	GAG	MRPCRKDVCLLYSLGADYAKLTDFTNQNPQGRLFRAGARAMSYAIGLMRSWYGYDTGVLLERALRRILRRSIAYCRVMERLGLESEYCRRYTYYNGVPCDLVSVFTVDVAYGDIMHMIANYNGETVSKIFTKMTEMCSTYEVIQ*
Ga0080003_100088617	F080245	N/A	MIFVWSARITIPGFRDEIFVSPALINKYAELTEDVYEVGMFLVPHKGHALLFLPTMVIKVDEELMKKLEETSIEDLNYPLNTIANVFT*
Ga0080003_100088618	F087442	GAGG	MMREGLVKVGNLVVDCKPCYVAGTGFNKEDVYVVSEGTVVFKWYDKIAVITVGKDGTKVNLFDIIDVRFLVERNENCMATRL*
Ga0080003_100088619	F081547	GAG	MPYLRGVFVNIDEETYYLSCGIVKGGNLDVETYTINNPEMMMVRMGRDIYVVTSELKLIIPVEPIRVLLSSETSKVYNEALSQGNEVRPA*
Ga0080003_100088620	F076263	GGAG	MLSAEDLSAILDDLEDMCARIPEGVTFHPTLEIRRRYANEEATYIKFDCRNHKYILTIVRMGIAKTTRVSTREDLYRRIFPEYAPGYNGSYTEEYWGEE*
Ga0080003_100088621	F080247	N/A	MIVWGKLIECLIDADINYLNGEPFNTQLRMRGKFLTFGNINIFEKTMPAGLETEQTIQICSPIDATFITYYQGMVAIMSFYFRDSNLYANISLTDPDTIKEFLILSTYYRKYGVNIPNVLDKIMYRKVPT*
Ga0080003_100088622	F061983	AGGAGG	LKKYTFKIKVVPIKLFEEEGVLSEQEFEQVKRTRIYKGMKVLEVKDLGYDSFWRNIHYYELIVISEGEGLFDCYYDDVIIVEKLKEVEGIIIKEKDPEPVKVMKKLVASWYQKKLVDEEKAYDVCKKFIM*
Ga0080003_100088624	F085905	N/A	MEEKLSFPSSRLSQFDHVAMNAYWLNVRLKYFTDPILYAVATGIWVINLMDDVDIAETGTQKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMEALQEVMKSLVHFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHNKK*
Ga0080003_100088625	F063848	N/A	VAKKKRSVHDPTLSTIHYQEQLEKMSKAYEKSSNRRNQRAVNGFTILKQVQQDVRNYLNEVSEALKMPVIAQLAVEFLGVAMSYVKGSNEGFNAYALTGKVAQTATLKATDIIHATTLTCAQVGEIINGMLKKISGATADPLTFTEDDGICEATVANPLPKLSVASASTGYTVAASDIFKAKSPEEVLLGQ*
Ga0080003_100088628	F087445	N/A	MSTSSSKPGDELVQRLLNMSEYDLKRIFKMIPIDKRLALALDTIQEYQNIQTKFNRLLDGLAMNAPKVREVMDRARRDKKPIDRLADMFMDMMETMLKSKAMSLTDEDKAKLKEKLMEVMESEE*
Ga0080003_100088630	F076264	GAG	MSAISTAIQNMVTGLQNLFIAMIDLFSNAVNAIGNTLSSLAQPIGYLIGVLAVFGSLLAIIYGVFRGRNGVGGLIGGLRGFFSGFI*