Scaffold Ga0080003_1000631

Overview

Basic Information

• Taxon OID: 3300005859
• Scaffold ID: Ga0080003_1000631
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22246
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (61.54%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_100063126	F075084	N/A	VDYARLIEFTNQNPTGRLFRRAGRAMIYARRLTASWYGYDTGVLLERALRRILKWSINYCRVMGKLGLQSEYCRRYTYYDEVPCEPVSEYDVEVAYSRIIHMIADYSSETVSKLLTEMTRECSTYEVR*
Ga0080003_100063128	F080245	N/A	VIFVWSARVIIPGFREEIFVSPALINGYTKITEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKNLEQTTIEDLNTPLNTIDHVFT*
Ga0080003_100063129	F087442	GAGG	MMREGLVKAGDLVIDCKPCYIAGAGFTKDDIYVVSEGTVVFKWYDKIAVITVSEEGTKVNLLDIIDVRFLVERNETCMVTKL*
Ga0080003_100063130	F081547	AGGAGG	MSYLRGVFINFNEETYYLSCGIVKGGSLDTETYTINNPELMMVRLGRDLYVVTSELKLLIPVEPIRVLLNSETSKVYNEASSQGNEVKLT*
Ga0080003_100063131	F076263	GAG	LDDLEDLCARIPEGVNFHPTLEIRRHYANEEATYIKFDCRNHRYILTIVRMGIAKTTRYSSREELFRRLFPEYPGEEVI*
Ga0080003_100063133	F061983	AGGAGG	LKKYVFKVKVIPIKIVDEDGVLSEQEFEQVMKTRIYKGMKVLEVKDLGVDEFWRFAHYYELTAVVEGGGLFDCYYGDIIDVEKLKDVGGIVVKSDDSEPVRSMKALVAKWYNKKLVEEEKAYEVCNTFVT*
Ga0080003_100063135	F085905	GGAGG	VSFPSSRLSQFDYVAMNAYWLNMRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKNFEYGLVYIYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDAIQNVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSILEVIRRHMRK*
Ga0080003_100063136	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSAPRRNQRATTGFTNLKFVQQAVKDYLNEVSEAMKLPVIAQLAVEFLGVAMAYLKGSNEGYNSYALAGRVAQIATLRATHIIHTTTLTCAQVGEIINGMLKKISGATTDPFTFTEEDGVCKATVANPLPKMSVASVSTGYTVSLSDILKAKTPEEVLMGK*