Scaffold Ga0080003_1000394

Overview

Basic Information

• Taxon OID: 3300005859
• Scaffold ID: Ga0080003_1000394
• Source Dataset Name: Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29488
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (54.00%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Washington, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F070317	Metagenome / Metatranscriptome	123	Y
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080003_100039412	F080245	N/A	VIFVWSAHVIMPGFRDEIFVSPALINSLGELTEGVYEVGMFAVPHAGHALLFLPTMVIKLDDRLMKQLEDTTIEDLNYPLNTIEHVFT*
Ga0080003_100039413	F087442	GAGG	MMREGLAKAGNLVVDCRPCYITGTGFTKDDVYVVSEGTIVFKWYDKIAVITVGEEGVKVTLLDIIDVRFLVERNENCLVTKL*
Ga0080003_100039414	F081547	GAGG	MSYLRGVFVSFNGETYYLSCGIINGGELDPETYTIYNPTLMMVRLGRDLYIVSNDIKQLIPIEPIRQLLTSETSKVYNETMAQGNEVRPA*
Ga0080003_100039415	F076263	N/A	MISLEDLSAILDDLEDLCARLPEGVYFHPTLELRRGYANEEATYVKFDCRDHKYILTIVREGVARTTRYSSREELFRRLFPDYVGEGII*
Ga0080003_100039416	F080247	N/A	MIVWGKLIECMIDTDVNYLNGELFGNPLRIKGKFLVFGNLYTFERTISETQTEQICVPIDATFMAYYEGMVAIMSFYLKEREMYANVSLTEPGTIKSFMNMSSFYRKYGISIPSLLDKIMYRKVPT*
Ga0080003_100039418	F061983	AGGAGG	LKKEEIKVTVIPIKLFDEEGVLSEKEFEEVKKTMTYKGMKVLEIKDLGTDEVRKWMHFYEIVAVSEGGGLFDCYYGDDILVEKLEYVGAIVVGDKDTQPVKTMKTLVAKWYNKVLVQEEKAYDICNKFVT*
Ga0080003_100039420	F085905	N/A	MEEKALFPSSRLSQFDYVAMNAYWLNARLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKNFEYGLIYVYSNSRIDTLFVVALTHYFNVKREKEYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKIDERIVLMMWNQLYIFVMGFLYGLYGRDAEAVFSGVVARHLLPYSVLEVIRRHMKK*
Ga0080003_100039421	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMAKAYEKSATRRNQRAVNGFAILKQVQETVRDYLNQASEAMKKPIIAQLSVEFLGIAMAYLKASNEGFSSYALTGRVAQIATLKATGIVSSTELTCAQVGEIVNGMLKKVSGMTADPLTFTENDGICEATPANPMPKLSIASPSTGYTVSLNDILKAKTPEEVLMGK*
Ga0080003_100039424	F087445	GAGG	MSEYELKRVFKMIPIDKRLALALDAIQEYQSIQTKFNNLLNGLAMNSPKVREVVENARKNRKPIDRFVDMIMDMMETMMKSKAMSLTDEDRAKLREKLKQVMESEE*
Ga0080003_100039426	F076264	AGGTGG	MSSISGAIQSMVNGLQNLFTAIVQVFGCAVNAIGNTLSSLASPIGYLIGVLAVFGSLIAIIWYAFRGRGGIGGLVGSIKNFFTGFL*
Ga0080003_100039427	F076264	AGG	MSSISNAIQNMVNGLQNLFVAIINVFGNAVDAIGNTLSSLASPIGYLIGVLAVFSSLIGIIWYVFRGRGGIGGLVGSIRDFFTGFL*
Ga0080003_100039437	F070317	GGA	MSSVEEIKELNLEKITKDAQEGEVCIVNKILKGKLTEIMPLIRDPASLSQKAMEFIQRRGNDIFYLFQCTTREGREVKLLVRQSFDPKSTFYGLMKKYKIIKIGDEINIFYNPEKRRYDFVL*
Ga0080003_100039438	F077502	GAG	MPTHGTDTAHIILWIEQNLPEEGKLSELIESIFSLIQEIILNNLSQGKQPITFTSVREIADAFKEMIYRSVEQSIGTLTDEVKNQIDTYFFKKLSDIYDKYYS*
Ga0080003_100039440	F077499	AGGTGG	MTDLFIFPNESLKAVGYPRITNAEIIYILTITVPIRDHPDTDAPMEEKMKFLSAYLPLEFQKIQYMKAIDKALNILRYSLYSREDNVLLELANKINDTYEVKKLIDKIRDTECAEDISNIKVTLTEARRYIYPDLSLSKYASAQAKQLNIRKYEYYARVFQCYVNQDKNLDMLTLFRVSNTVYNFIRLNNLTNIIKKMQFKNDKIAQLAEKIRQRVNITLEAMGEKKITQPDENLLNSITIKIKEIDLG*
Ga0080003_100039441	F056742	AGG	MKLADCRYKCKQAYFRKSIFVKMFVKEVEKVYGVRLRTCEDFCKFYVLFLSVAEMLYGKHYNHAIFKAIVRGKPNLYMCIKCEQPFTAEESITHTLQHMKQLGYKPLAYKENI*