NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080007_1097858

Scaffold Ga0080007_1097858


Overview

Basic Information
Taxon OID3300005857 Open in IMG/M
Scaffold IDGa0080007_1097858 Open in IMG/M
Source Dataset NameHot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1696
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat Streamer → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameOctopus Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077497Metagenome / Metatranscriptome117Y
F087443Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0080007_10978583F077497N/AMDKEQIDKLEEILERHLFGKANNPEYELTKMQVIILYLIYQKLKSIDERLNAIDQSLFEIANPGLFEK*
Ga0080007_10978584F087443N/AMDSLKGIRKNYWAKYSAEDNIEYIDKELTKIAVDLGLDPSELRAWVFKAFIYDSEVKAKVIEYIKKNGQRTN*

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