Basic Information | |
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Taxon OID | 3300005857 Open in IMG/M |
Scaffold ID | Ga0080007_1066998 Open in IMG/M |
Source Dataset Name | Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPADES assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9877 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat Streamer → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Octopus Spring, Yellowstone National Park, Wyoming, USA | |||||||
Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F043237 | Metagenome / Metatranscriptome | 156 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0080007_10669985 | F043237 | GGAGG | MDLERTSRYIAQLSRHGYKYAILGELSNYNRELVKRIDLEGFVFYLCRLPSKREVIAYCLKKTDKPFKVYCLASKPLEIPHMPLKLHYDEKIQRLRLLAQKSFINDCLNAIERASSLTYPSPKLYIAAVNKALRQLYSVLAYTYNDRERVRAIRKKVKHWVVETLKKQYGLKPKDAMTDYHRYVLKFSDVLRKKRQKAHKR* |
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