Scaffold Ga0080005

Basic Information
Taxon OID	3300005856 Open in IMG/M
Scaffold ID	Ga0080005_143851 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4417
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4417

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Joseph's Coat, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0080005_14385111	F061983	AGGAGG	LKKYIFKVKVVPIKLFEEEGVLSEQEFEQVKRIRIYKGMKVIEVKDLGYDSFWKNVHYHELIVVSEGGGLFDCYYGDVIDVKKLKDVGAIVVKEKDIEPMRTMKTLVARWYNKKLVEEEKAYGICNKFVT*
Ga0080005_1438514	F075084	GAG	VRPCRKDVCLLYSLGADYAKLINFTNQNPQGRLFRAGARAMAYSIGLMRSWYGYDTGVLLERALRRILRRSVMYCRIMERLGLQSEYCRRYTYYNGVPCDLVSVFTVDVAYGDIMHMIANYNTETVSKILTKMTEMCSTYEVT*
Ga0080005_1438516	F080245	N/A	MIFVWSARITIPGFRDEIFVSPALINRYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDEELMKKLEETSIEEPNIPLNIITNVFT*
Ga0080005_1438517	F087442	GAGG	VMREGLVKVGNLVVDCKPCYVAGTGFNKDDVYVVSEGTVVFKWYDKIAVITVGEEGTKVNLFDIIDVRFLVERNENCLATKL*
Ga0080005_1438518	F081547	GAG	MPYLRGVFVNIGEETYYLSCGIVKGGNLDTETYTINKPEMMMVRMGRDIYVVTSELKLLIPVEPIRVLLSSETSKVYNEALSQGNEVKPA*
Ga0080005_1438519	F076263	GGAG	MLSAEDLSAVLDDLEDLCARLPEGVTFHPTLEIRRRYANEEATYIKFDCRNRRYILTIVRTGIAKTTRVSTREDLYRRIFPEYAPGYTGNYTEEYWGEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080005_143851

Overview

Ecosystem & Geography

Associated Families

Sequences